PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006026
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family SBP
Protein Properties Length: 101aa    MW: 11442.7 Da    PI: 5.173
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006026genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP28.93e-0960855378
                 TT--SS--S-STTTT-------S--- CS
          SBP 53 sefDeekrsCrrrLakhnerrrkkqa 78
                 +efDe+k sC + La+hn+rrrk+++
  DCAR_006026 60 EEFDEGKISCCKGLAGHNRRRRKTHP 85
                 79*********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS001800320IPR027302Glutamine synthetase, N-terminal conserved site
SuperFamilySSF1036122.75E-65987IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MEFDGSSTGQ APGDDSEVIV KYTHQLMSQF LQTTDVMRLR FSAEVPWFGI EQEYTLLKKE  60
EFDEGKISCC KGLAGHNRRR RKTHPENAAN AVNSNEEQYL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.19e-08squamosa promoter binding protein-like 1